Links

Affiliated Institutions

• CHDD (IHDD Research Affiliates)
• CHU Ste-Justine Research Centre
• Dept. of Obstetrics, Université de Montréal
• CRRA (Animal Reproduction Research Centre)
• Dept. of Neurosciences, UdeM
• Lawson Health Research Institute
• The Spatial Web Foundation

Research Databases & Atlases

Biological Atlases

• Allen Cell Tools
• Allen Brain Atlas
• Human Protein Atlas
• Translating Time — Cross-species brain developmental timeline

Genomics & Molecular Databases

• SFARI Gene Database — Autism spectrum genetics
• String-db — Protein interaction networks
• ImmPort — Immunology data
• BioNumbers — Quantitative biology reference

Open Data Sources

• Open Science Framework
• PregSource (NIH)
• Our World in Data
• U.S. Healthcare Data
• Child Mortality Data

Biomedical Research Tools

Lab & Imaging Tools

• Cytoscape — Network visualization
• Antibody Search (Linscott’s)
• BD Spectrum Viewer
• Andrew Janowczyk’s Pathology Tools

Physiological Signal Databases

• Fetal ECG Database (fecgsyn)
• PhysioZoo — HRV analysis platform
• HRV Measures Review

Writing & Publishing

• Jane — Journal/author name estimator
• AnyStyle — Reference parsing
• Citation Finder
• Readability Assessment

Statistics & Calculators

• Sample Size Calculator
• Bayesian Calculator
• NIH Paylines

Computational Tools

Data Visualization

• Plot.ly
• DataWrapper
• Colormind — AI color palette generator
• Word Cloud (Jason Davies)
• HiPlot (Meta Research) — High-dimensional data exploration
• Spurious Correlations — A healthy reminder

Machine Learning & Data Science

• Scikit-learn ML Map
• MLBox — AutoML framework
• Awesome MLOps — Curated MLOps resources
• Exploratory — Visual data analysis
• DataIKU — Data science platform
• JupyterLab
• NAS Energy Estimator (MIT)
• Activation Atlas (Distill) — Neural network visualization

Neuroimaging & Signal Processing

• MNE-Python — MEG/EEG analysis
• EEGLAB Extensions
• NiPy — Neuroimaging in Python
• WFDB / WFDB-Python — Waveform database tools
• pyunicorn — Recurrence analysis
• JIDT — Information dynamics toolkit
• LTFAT — Time-frequency analysis
• TISEAN — Nonlinear time series analysis

Learning Resources

• Python Data Science Handbook
• Python Algorithms Textbook
• Deep Learning Textbook — Goodfellow, Bengio & Courville
• Interpretable ML Book
• Deep Learning in Medicine Review
• Google Scholar Labs — Experimental search features from Google Scholar

Lectures & Talks

• Cardiology Grand Round Lectures (YouTube)
• IEEE BHI Lectures
• Martin Frasch GitHub Stars — Curated repositories